Knowledge Graph - Etl Pipeline Generator

Generate automated ETL pipelines for transforming and loading data into graph databases or knowledge graphs.

ETL Pipeline Generator

Design automated Extract-Transform-Load pipelines for knowledge graph construction.

This skill generates structured ETL pipelines that move raw data from various sources into graph-ready datasets or knowledge graph storage systems. It orchestrates data ingestion, transformation, and loading steps so that messy input data becomes structured graph data.

Quick Start

Use When

• Building automated data ingestion workflows
• Designing Extract-Transform-Load pipelines
• Orchestrating multi-step data transformations
• Creating repeatable data pipeline architectures
• Integrating multiple data sources
• Automating knowledge graph population
• Building data quality and validation workflows

Inputs

• Data source specifications (type, location, format)
• Transformation requirements and rules
• Target system definitions (database, format)
• Data quality requirements
• Pipeline scheduling and monitoring rules
• Error handling and recovery strategies

Outputs

• Pipeline configuration (YAML)
• Directed Acyclic Graph (DAG) definitions
• Python/Scala/SQL implementation scripts
• Data flow diagrams
• Pipeline documentation
• Monitoring and alerting configurations

Example

Simple Customer Data Pipeline:

yaml

name: customer_graph_ingestion
description: Ingest customer data into knowledge graph

extract:
  source_type: csv
  source_path: data/customers.csv
  format: csv

transform:
  - normalize_entities
  - detect_relationships
  - validate_schema

load:
  target: neo4j
  database: customer_graph
  method: bulk_import

Generated Pipeline Flow:

text

Extract CSV → Normalize Entities → Detect Relationships → 
Validate Data → Load to Neo4j → Verify Load

ETL Pipeline Architecture

1. Extract Stage

Purpose: Retrieve raw data from external sources

Supported Sources:

• CSV files
• JSON files
• REST APIs
• Databases (SQL, NoSQL)
• Text documents
• Streaming sources (Kafka, Pub/Sub)
• Data warehouses (Snowflake, BigQuery)

Configuration:

yaml

extract:
  source_type: csv|json|api|database|text|stream
  location: /path/to/file or endpoint
  format: format_specifier
  authentication: credentials (if needed)
  filtering: (optional) filter criteria

2. Transform Stage

Purpose: Convert raw data into graph-ready structures

Transformation Operations:

• Entity Detection - Identify entity boundaries
• Relationship Inference - Discover relationships
• Schema Mapping - Map to target schema
• Data Normalization - Standardize values
• Type Conversion - Convert data types
• Deduplication - Remove duplicates
• Enrichment - Add contextual data
• Validation - Check data quality
• Filtering - Remove invalid records

Example Transform:

yaml

transform:
  operations:
    - normalize_entity_names
    - infer_relationships_from_columns
    - convert_dates_to_iso8601
    - deduplicate_entities
    - validate_required_fields
    - enrich_with_external_data

3. Load Stage

Purpose: Load transformed data into target system

Supported Targets:

• Neo4j - Property graph database
• RDF Triple Stores - SPARQL endpoint
• ArangoDB - Multi-model database
• TigerGraph - Graph database
• Property Graph Engines - Generic property graphs
• CSV/JSON - File output

Configuration:

yaml

load:
  target: neo4j|rdf|arangodb|tigergraph|property_graph|file
  connection_params:
    host: localhost
    port: 7687
    database: graph_database
  method: bulk_import|streaming|batch
  batch_size: 1000

Pipeline Stages Explained

Extract Stage Details

Data Source Connectors:

text

CSV Extractor
  - delimiter detection
  - header parsing
  - encoding handling
  - chunk processing

JSON Extractor
  - nested object handling
  - array flattening
  - schema inference
  - streaming JSON support

API Extractor
  - authentication handling
  - pagination support
  - rate limiting
  - response transformation

Database Extractor
  - SQL query execution
  - connection pooling
  - partition handling
  - transaction management

Transform Stage Details

Data Processing Operations:

text

Normalization
  - case normalization
  - whitespace trimming
  - special character handling
  - URL encoding

Type Conversion
  - string → integer/float
  - string → datetime
  - string → boolean
  - safe type conversions

Deduplication
  - exact match detection
  - fuzzy matching
  - identity resolution
  - merge strategies

Validation
  - required field checks
  - data type validation
  - range validation
  - pattern matching

Load Stage Details

Data Loading Methods:

text

Bulk Import
  - CSV nodes/edges files
  - Batch processing
  - High throughput
  - Transactional rollback

Streaming Load
  - Real-time ingestion
  - Event-based
  - Lower latency
  - Connection streaming

Batch Load
  - Scheduled runs
  - Configurable batch sizes
  - Progress tracking
  - Failure recovery

Pipeline Execution Modes

1. Synchronous Execution

text

Sequential execution of all stages
Immediate feedback on success/failure
Best for: Small to medium datasets

2. Asynchronous Execution

text

Non-blocking pipeline execution
Async progress monitoring
Best for: Large datasets, scheduled runs

3. Streaming Mode

text

Continuous data flow
Real-time processing
Best for: Live data feeds, event streams

4. Scheduled Execution

text

Cron-based or scheduled triggers
Repeatable, idempotent operations
Best for: Regular data refreshes

Pipeline Monitoring and Observability

Monitoring Capabilities

• Step execution times
• Data volume metrics (rows in/out)
• Error tracking and logging
• Data quality metrics
• Performance profiling

Alerting

yaml

alerts:
  - condition: execution_time > 3600s
    action: notify_admin
  - condition: error_count > 10
    action: pause_pipeline
  - condition: data_quality_score < 0.9
    action: log_warning

Error Handling and Recovery

Error Handling Strategies

text

Fail Fast: Stop on first error
Fail Safe: Continue with logging
Retry: Exponential backoff retry
Skip: Skip failed records, continue
Dead Letter: Route to error queue

Recovery Mechanisms

text

Checkpoint/Resume: Save state, resume from checkpoint
Rollback: Undo on failure
Compensation: Execute cleanup actions
Retry with Backoff: Automatic retry logic

Output Formats

YAML Pipeline Configuration

yaml

name: pipeline_name
description: pipeline description

extract:
  source_type: csv
  location: data/file.csv

transform:
  operations:
    - normalize_entities
    - validate_data

load:
  target: neo4j
  database: my_graph

DAG (Directed Acyclic Graph)

text

Extract(csv) → Parse → Normalize → 
Validate → Deduplicate → Load(Neo4j) → Verify

Python Implementation

python

def pipeline_execution():
    data = extract_from_csv('data.csv')
    data = normalize_entities(data)
    data = validate_data(data)
    load_to_neo4j(data)
    return verify_load()

Execution Metrics

json

{
  "pipeline_id": "customer_ingestion_001",
  "start_time": "2024-04-09T10:00:00Z",
  "end_time": "2024-04-09T10:05:30Z",
  "duration_seconds": 330,
  "stages": [
    {"name": "extract", "duration": 45, "records": 10000},
    {"name": "transform", "duration": 120, "records": 9900},
    {"name": "load", "duration": 150, "records": 9900}
  ],
  "status": "SUCCESS"
}

Execution Steps

1. Validate Pipeline Configuration – Check all parameters
2. Initialize Extractors – Set up data source connections
3. Execute Extract – Retrieve raw data
4. Initialize Transformers – Prepare transformation engines
5. Execute Transform – Apply transformation operations
6. Validate Transformed Data – Check data quality
7. Initialize Loaders – Set up target connections
8. Execute Load – Load data to target system
9. Verify Load – Confirm successful loading
10. Generate Metrics – Collect execution statistics

Integration with Other Skills

The ETL Pipeline Generator orchestrates these skills:

• API Ingestion Connectors → Extract from APIs
• CSV Graph Loader Generator → Transform and load CSVs
• JSON to Triples Converter → Transform JSON to RDF
• Text Entity Relation Extractor → Extract from text
• Graph Schema Validation → Validate loaded data
• Graph Constraint Generator → Apply constraints

Recommended Libraries

• Orchestration: Apache Airflow, Prefect, Dagster
• ETL Processing: Apache Spark, Pandas, Polars
• Data Validation: Great Expectations, Pandera
• Graph Loaders: neo4j, rdflib, networkx
• Scheduling: APScheduler, Luigi, Celery
• Monitoring: Prometheus, Grafana, DataDog

Best Practices

✓ Idempotency – Pipelines can be rerun safely ✓ Data Validation – Validate at each stage ✓ Error Handling – Graceful error management ✓ Monitoring – Track pipeline execution ✓ Documentation – Document data lineage ✓ Testing – Test with sample data first ✓ Version Control – Track pipeline changes ✓ Scalability – Design for data growth ✓ Security – Secure credentials and data ✓ Performance – Optimize transformation logic

References

See pipeline-patterns.md for detailed ETL pipeline patterns and example-pipelines.md for complete real-world pipeline examples.

---

Version: 1.0.0