Protein-Ligand Docking

This skill appears to implement a legitimate protein–ligand docking pipeline, but before installing or running it you should: (1) Confirm that the environment has the required external tools (OpenBabel 'obabel', AutoDock Vina) and Python packages (Biopython, NumPy, RDKit, python-docx, etc.). The registry metadata currently omits these requirements, so the skill may fail or produce misleading results if they are missing. (2) Verify the missing referenced file: SKILL.md points to references/alphafold_multimer_colab.ipynb but that file isn't in the bundle—ask the publisher for the notebook or update the workflow to make explicit how to obtain it. (3) Review the scripts locally before running: they invoke subprocesses (obabel, vina) and read/write files in the working directory; ensure you run them in an isolated workspace with input files you trust. (4) If you plan to allow autonomous agent invocation, restrict network access or review logs—while this skill doesn't request secrets, autonomous execution plus external web access can increase risk if you haven't vetted the inputs and outputs. (5) Consider running the scripts manually in a controlled environment first to confirm outputs and to ensure the correct binary paths and versions are used. If you want, I can produce a checklist of the exact packages, command-line tools and minimum versions to install, or highlight the precise JSON/field mismatches to fix in the code.