Biomolecular Structure Prediction

v1.0.4

Biomolecular structure prediction tools for Chai-1, Boltz-2, and Alphafold3 via SciMiner APIs.

3· 124·0 current·0 all-time
bySciMiner@xiongzhp
MIT-0
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LicenseMIT-0 · Free to use, modify, and redistribute. No attribution required.
Security Scan
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Benign
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Benign
high confidence
Purpose & Capability
Name/description (structure prediction for Chai-1, Boltz-2, Alphafold3) match the declared requirement (SCIMINER_API_KEY) and the bundled registry code. The files present (sciminer_registry.py) define the providers and parameters appropriate for such a wrapper; there are no unrelated credentials, binaries, or configuration paths requested.
Instruction Scope
SKILL.md instructs the agent to call SciMiner API endpoints (invoke, result, file upload) and to send the SCIMINER_API_KEY as X-Auth-Token. This stays within the stated purpose, but it does require uploading user files (MSA, templates, mmCIF, etc.) and explicitly instructs the agent to append a share_url when summarizing results. Users should be aware that input sequences/files will be transmitted to sciminer.tech.
Install Mechanism
No install spec (instruction-only plus a small registry module). Nothing is downloaded or written to disk by an installer; risk from installation is low.
Credentials
Only a single credential (SCIMINER_API_KEY) is required and used by the instructions. That credential directly maps to the described external API usage. No other secrets or unrelated environment variables are requested.
Persistence & Privilege
always is false, the skill does not request permanent presence or modify other skills/system settings. It does not attempt to persist credentials or change agent configuration beyond using the provided SCIMINER_API_KEY at runtime.
Assessment
This skill appears to be what it says: a SciMiner wrapper for structure prediction. Before installing, verify you trust sciminer.tech (review its privacy/security policies) because the skill will upload sequence/MSA/template files and your API key will be sent to that service. Avoid uploading proprietary or sensitive sequences unless permitted. Store the SCIMINER_API_KEY in a secure place and rotate it if you suspect misuse. If you need on-premises or local-only prediction (to avoid external data sharing), consider alternative tools that run locally rather than using this remote API. Finally, the registry code has small, non-security issues (e.g., a duplicate keyword mapping) but nothing that contradicts the skill's purpose.

Like a lobster shell, security has layers — review code before you run it.

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License

MIT-0
Free to use, modify, and redistribute. No attribution required.

Runtime requirements

EnvSCIMINER_API_KEY
Primary envSCIMINER_API_KEY

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