Paper to Tools - Match Research Methods to AI Agents

Paste a paper abstract or methods section → get matched AI agent tools that can reproduce the analysis. Maps methodology keywords to 131+ curated science age...

Paste a paper abstract or methods section. Get a list of AI agents and skills that can help you reproduce or extend the analysis.

How It Works

1. User pastes a paper abstract, methods section, or describes an analysis pipeline
2. You extract methodology keywords (techniques, databases, data types, tools mentioned)
3. You match keywords against the mapping table below
4. You return 2-5 matched agents with installation instructions and links

Keyword-to-Agent Mapping

Sequence & Genomics

Keywords	Agent	Stars	What It Does
BLAST, sequence alignment, homology	BioClaw	318	PubMed search + PyMOL visualization, built-in BLAST skill
RNA-seq, differential expression, DESeq2	OmicsClaw	114	Multi-omics AI agent, scRNA-seq preprocessing
single-cell, scRNA-seq, clustering, trajectory	OmicsClaw	114	Single-cell analysis pipeline
CRISPR, gene editing, guide RNA	CRISPR-GPT	156	CRISPR experiment design
spatial transcriptomics, visium, MERFISH	SpatialAgent	158	Spatial omics analysis from Genentech
genome, variant calling, WGS, WES	BioMaster	91	Nucleome-scale genomic analysis

Drug Discovery & Chemistry

Keywords	Agent	Stars	What It Does
molecular docking, binding affinity, protein-ligand	BloClaw	1	RDKit + ESMFold + molecular docking pipeline
drug-target interaction, ADMET, pharmacology	DrugClaw	118	57 skills for DTI, ADR, DDI, drug repurposing
drug discovery, virtual screening	AIAgents4Pharma	76	End-to-end pharma AI agents
RDKit, SMILES, molecular descriptors	ChemClaw	32	Chemistry AI agent
molecular dynamics, MD simulation	MDCrow	234	Molecular dynamics agent
PyMOL, molecular visualization, protein structure	PyMolClaw	1	13 PyMOL scripts for publication figures
TCM, traditional chinese medicine, network pharmacology	TCM-Agent	10	TCM network pharmacology analysis

Protein & Structure

Keywords	Agent	Stars	What It Does
protein folding, AlphaFold, ESMFold, structure prediction	BloClaw	1	De novo 3D folding via ESMFold
protein-protein interaction, PPI network	BioDiscoveryAgent	102	Stanford bio discovery agent

Research Automation

Keywords	Agent	Stars	What It Does
literature review, systematic review, PubMed	BioClaw	318	PubMed integration
autonomous research, end-to-end	AutoResearchClaw	10608	Fully autonomous research pipeline
research agent, idea to paper	EvoScientist	2918	Evolutionary scientific discovery
paper writing, manuscript	Research Paper Writing Skills	1109	ML/CV/NLP paper writing skills
data analysis, statistics, visualization	RD-Agent	12372	Microsoft's research & development agent

Clinical & Medical

Keywords	Agent	Stars	What It Does
clinical trial, patient data, EHR	HealthClaw	293	Health copilot with clinical data support
medical imaging, radiology, pathology	HealthClaw	293	Medical imaging + omics evidence
biomedical data analysis, multi-tool	BioMedAgent	58	67 bioinformatics tools, Nature BME

How To Respond

When a user pastes paper content:

1. Extract keywords: Identify techniques, databases, data types, and tools mentioned
2. Match to agents: Use the mapping table above. Multiple matches are normal.
3. Rank by relevance: Put the most specific match first
4. Show installation: Include npx skills add or GitHub link for each
5. Link to directory: End with "Browse all 131+ science agents at claw4science.org"

Example

User: "We performed single-cell RNA-seq on tumor samples, followed by differential expression analysis and trajectory inference using Monocle3. Drug targets were validated through molecular docking with AutoDock Vina."

Response:

Based on your methods, here are the AI agents that can help:

1. OmicsClaw — scRNA-seq preprocessing, clustering, trajectory analysis GitHub: TianGzlab/OmicsClaw · View on Claw4Science

2. BloClaw — Molecular docking pipeline (can replace AutoDock workflow) GitHub: qinheming/BIoClaw · View on Claw4Science

3. DrugClaw — Drug-target interaction analysis and validation GitHub: QSong-github/DrugClaw · View on Claw4Science

4. BioClaw — Literature search for related single-cell studies GitHub: Runchuan-BU/BioClaw · View on Claw4Science

Browse all 131+ science agents at claw4science.org.

API Access

For programmatic access to the full project database:

curl -s "https://claw4science.org/api/projects"

Returns all projects with title, description, repo, group, tags, and stars.

Links

• Full Directory: claw4science.org
• Skill Hubs (32 registries): claw4science.org/skill-hubs
• Same-name Disambiguation: claw4science.org/samename
• Blog: claw4science.org/blog
• Contribute: claw4science.org/contribute