Protein Docking Configurator

This skill mostly does what it says, but take these precautions before installing or running it: - Dependency check: Confirm whether numpy is actually required. The SKILL.md inconsistently lists numpy but also says no extra packages are needed. Install only the packages the code truly uses. - Path-safety: The script reads files by path without explicit sanitization. Run it in a restricted/sandboxed workspace and avoid giving it paths to sensitive system files. Prefer running it inside a container or VM with limited filesystem access. - Inspect full code: The file excerpt appears benign, but review the remainder of scripts/main.py (the provided file was truncated) for any network calls, subprocess.exec usage, or writing outside expected output paths before trusting it on sensitive inputs. - Test with non-sensitive example files first to verify behavior and outputs. - Consider adding or enforcing input validation (reject '../' traversal), and run the script under a user account with minimal privileges. If you want, I can scan the complete scripts/main.py for network/subprocess calls and any other risky patterns, or produce a short checklist/command set to run it safely in a sandbox.