Spatial Transcriptomics Mapper
v1.0.0Map spatial transcriptomics data from 10x Genomics Visium/Xenium onto.
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byAIpoch@aipoch-ai
MIT-0
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LicenseMIT-0 · Free to use, modify, and redistribute. No attribution required.
Security Scan
OpenClaw
Benign
high confidencePurpose & Capability
The skill's name and description (mapping Visium/Xenium data) align with the included Python code (SpatialMapper class, Visium/Xenium loaders, plotting). Minor inconsistency: SKILL.md and usage examples reference scripts/generate_test_data.py and other helper scripts that are not present in the file manifest; SKILL.md also claims 'plus 1 additional script(s)' beyond __init__.py, but only main.py and __init__.py are included. This appears to be a packaging/documentation omission rather than malicious misdirection.
Instruction Scope
SKILL.md instructs the agent to validate inputs and run the packaged script (python scripts/main.py). The instructions are scoped to reading local dataset files, performing analysis, and producing image outputs. The runtime instructions do not direct the agent to read unrelated system files, environment variables, or transmit data to external endpoints. The only scope issue: examples reference a missing generate_test_data.py.
Install Mechanism
No install spec is provided (instruction-only with code shipped); dependencies are listed in requirements.txt and SKILL.md suggests pip installs. This is a common, low-risk pattern. No network-download/install scripts or obscure URLs are used by the package itself.
Credentials
The skill declares no required environment variables, no primary credential, and the code does not access environment secrets. Dependencies are typical data-analysis libraries; requested resources are proportional to the stated task.
Persistence & Privilege
The skill does not request always:true and does not modify other skills or system-wide agent settings. It creates its own output directory under the provided output path (normal behavior).
Assessment
This skill appears to be what it says: a local tool for mapping Visium/Xenium spatial transcriptomics data. Before installing/running: 1) Note the missing helper script referenced in SKILL.md (scripts/generate_test_data.py) — contact the author or remove the example invoking that script. 2) Inspect the full scripts/main.py locally (already included) for any additional behaviors you want to understand; the provided portion shows only local file I/O and plotting. 3) Run in an isolated environment (virtualenv or container) and install dependencies from PyPI to avoid polluting your system. 4) Provide only datasets you trust (the tool will read local HDF5/parquet/image files). 5) If you need network access restrictions, enforce them at the runtime/container level — the skill itself does not appear to perform network operations. 6) If you want higher assurance, run python -m py_compile scripts/main.py and a quick static scan for subprocess, socket, requests, urllib, or exec usage (none were detected in the inspected code).Like a lobster shell, security has layers — review code before you run it.
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License
MIT-0
Free to use, modify, and redistribute. No attribution required.