Pharmgx Reporter

Pharmacogenomic report from DTC genetic data (23andMe/AncestryDNA)

duplicate of @manuelcorpas/pharmgx-reporter

Audits

Pass

ClawScanPass

Agentic behavior and permission review.

Static analysisPass

Pattern checks against bundled files.

VirusTotalPass

Multi-engine malware detections and file reputation.

Install

openclaw skills install clawbio-pharmgx-reporter

PharmGx Reporter

Generate a pharmacogenomic report from consumer genetic data (23andMe, AncestryDNA).

What it does

Parses raw genetic data files (auto-detects 23andMe or AncestryDNA format)
Extracts 31 pharmacogenomic SNPs across 12 genes
Calls star alleles and determines metabolizer phenotypes
Looks up CPIC drug recommendations for 51 medications
Generates a markdown report with gene profiles, drug tables, and alerts

Genes covered

CYP2C19, CYP2D6, CYP2C9, VKORC1, SLCO1B1, DPYD, TPMT, UGT1A1, CYP3A5, CYP2B6, NUDT15, CYP1A2

Drug classes

Antiplatelet, opioids, statins, anticoagulants, PPIs, antidepressants (TCAs, SSRIs, SNRIs), antipsychotics, NSAIDs, oncology, immunosuppressants, antivirals

Usage

python pharmgx_reporter.py --input patient_data.txt --output report

Disclaimer

This tool is for research and educational purposes only. It is NOT a diagnostic device. Always consult a healthcare professional before making any medication decisions.