Missing User Warnings
Medium
- Confidence
- 96% confidence
- Finding
- The instructions explicitly direct the agent to copy secret-bearing files like `.env*`/`.dev.vars` and merge hook config into tool settings, but they do not require a clear user warning or confirmation immediately before those file mutations occur. This is risky because it can silently duplicate secrets into additional worktrees and persist auto-executing hooks in repo config, increasing exposure and surprise side effects.
