{"skill":{"slug":"in-silico-perturbation-oracle","displayName":"In Silico Perturbation Oracle","summary":"Virtual gene knockout simulation using foundation models to predict transcriptional changes","tags":{"latest":"0.1.0"},"stats":{"comments":0,"downloads":285,"installsAllTime":0,"installsCurrent":0,"stars":0,"versions":1},"createdAt":1773394988061,"updatedAt":1777529300530},"latestVersion":{"version":"0.1.0","createdAt":1773394988061,"changelog":"Initial public release of In Silico Perturbation Oracle — a virtual gene knockout simulation tool powered by biological foundation models.\n\n- Simulates in silico gene knockouts to predict transcriptomic changes using models like Geneformer and scGPT.\n- Provides modules for gene knockout prediction, differential expression analysis, pathway enrichment, target scoring, and visualization reports.\n- Supports command-line and Python API usage, with flexible input specification for custom analysis.\n- Outputs include DEGs, pathway enrichment, target scoring reports, and interpretable visualization files.\n- Reference architecture and clear input/output schemas included for straightforward integration.","license":"MIT-0"},"metadata":{"os":null,"systems":null},"owner":{"handle":"ewankeynes","userId":"s17007tpbkd82mxz1myqfx545183jqn9","displayName":"ewankeynes","image":"https://avatars.githubusercontent.com/u/68137408?v=4"},"moderation":{"isSuspicious":true,"isMalwareBlocked":false,"verdict":"suspicious","reasonCodes":["suspicious.llm_suspicious"],"summary":"Detected: suspicious.llm_suspicious","engineVersion":"v2.4.5","updatedAt":1777529300530}}